Laboratory of Physical and Chemical Methods for Structure Analysis
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Publications


2015

Ivanov M.V., Levitsky L.I., Lobas A.A., Tarasova I.A., Pridatchenko M.L., Zgoda V.G., Moshkovskii, S.A., Mitulovic G., Gorshkov M.V., Peptide identifications in “shotgun” proteomics using tandem mass spectrometry: comparison of search engine algorithms, Journal of Analytical Chemistry, 70(14), 1614-1619 (2015)

Ivanov M.V., Levitsky L.I., Tarasova I.A., Gorshkov M.V., Pepxmltk – a Format Converter for Peptide Identification results obtained from tandem mass spectrometry data using X!Tandem search engine, Journal of Analytical Chemistry, 70(13), 1598-1599 (2015)

Tarasova I.A., Surin A.K., Fornelli L., Pridatchenko M.L., Suvorina M.Y., Gorshkov M.V.. Ion coalescence in Fourier transform mass spectrometry: should we worry about this in shotgun proteomics?, European Journal of Mass Spectrometry, 21(3), 459-470 (2015).

Tarasova I.A., Goloborodko A.A., Perlova T.Y., Pridatchenko M.L., Gorshkov A.V., Evreinov V.V., Ivanov A.R., Gorshkov M.V., Application of Statistical Thermodynamics To Predict the Adsorption Properties of Polypeptides in Reversed-Phase HPLC, Analytical Chemistry, 87 (13), 6562-6569 (2015)

Chernobrovkin A.L., Kopylov A.T., Zgoda V.G., Moysa A.A., Pyatnitskiy M.A., Kuznetsova K.G., Ilina I.Y., Karpova M.A., Karpov D.S., Veselovsky A.V., Ivanov M.V., Gorshkov M.V., Archakov A.I., Moshkovskii S.A., Methionine to isothreonine conversion as a source of false discovery identifications of genetically encoded variant in proteogenomics, Journal of Proteomics, 120, 169-178 (2015)

M. Ivanov, I. Tarasova, K. Srzentic, M. Pridatchenko, L. Levitsky, A. Lobas, E. Solovyeva, J. Bubis, Y. Tsybin, M. Gorshkov, MS/MS-free protein identification in complex mixtures using multiple enzymes with complementary specificity, Proteomic Forum 2015, March 22-25, 2015, Berlin, Germany (Конгресс немецкого протеомного общества , Берлин, Германия, март 22-25, 2015) - oral

J.A. Bubis, M.V. Ivanov, L.I. Levitsky, I.A. Tarasova, M.V. Gorshkov, Comparative evaluation of label-free quantitation methods using different enzymes, 9th Summer School “Mass Spectrometry in Biotechnology and Medicine”, July 5-11, 2015, Dubrovnik, Croatia  (9-я Летняя Школа по масс-спектрометрии в биотехнологиях и медицине, Дубровник, Хорватия, июль 5- 11, 2015) - poster

E.M. Solovyeva ,  A.A. Lobas , A.T. Kopylov , I.Y. Ilyina , L.I. Levitsky , M.V. Ivanov , S.A. Moshkovskii , M.V. Gorshkov, Optimal fractionation of complex peptide mixtures using predictive  chromatography of biomacromolecules, 9th Summer School “Mass Spectrometry in Biotechnology and Medicine”, July 5-11, 2015, Dubrovnik, Croatia (9-я Летняя Школа по масс-спектрометрии в биотехнологиях и медицине, Дубровник, Хорватия, июль 5- 11, 2015) - poster

L.I. Levitsky, M.V. Ivanov, A.A. Lobas, M.V. Gorshkov, Controlling the accuracy of false discovery rate estimation based on target-decoy approach, 13th Annual Austrian Proteomic Research Symposium (APRS), August 26-28, 2015, Klosterneuburg, Austria (13-й ежегодный симпозиум Австрийского протеомного общества, Клостернойбург, Австрия, август 26-28, 2015) - oral

T.-Y. Lin, M.V. Gorshkov, A.V. Tolmachev, J.B. Shaw, R.K. Chu, M. Zhou, R. Harkewicz, R. James Ewing, D.W. Koppenaal,  E.W. Robinson, L. Pasa-Tolic,  Frequency multiplication for high-throughput Fourier-transform ion cyclotron resonance mass spectrometry, 63d ASMS Conference on Mass Spectrometry and Allied Topics, St. Louis, Missouri, May 31 – June 4, 2015. – poster

2014

Karpova M.A., Karpov D.S., Ivanov M.V., Pyatnitskiy M.A., Chernobrovkin A.L., Lobas A.A., Lisitsa A.V., Archakov A.I., Gorshkov M.V., Moshkovskii S.A., Exome-Driven Characterization of the Cancer Cell Lines at the Proteome Level: The NCI-60 Case Study, Journal of Proteome Research, 13(12), 2014, p. 5551.

Nagornov K.O., Gorshkov M.V., Kozhinov A.N., Tsybin Y.O., High-resolution fourier transform ion cyclotron resonance mass spectrometry with increased throughput for biomolecular analysis, Analytical Chemistry, 86(18), 2014, p. 9020.

Ivanov M.V., Levitsky L.I., Lobas A.A., Panic T., Laskay U.A., Mitulovic G., Schmid R., Pridatchenko M.L., Tsybin Y.O., Gorshkov M.V.,Empirical Multidimensional Space for Scoring Peptide Spectrum Matches in Shotgun Proteomics, Journal of Proteome Research, 13(4), 2014, p. 1911.

M.V. Gorshkov, K. O. Nagornov, A. N. Kozhinov, Y. O. Tsybin, FT-ICR MS at “40 Tesla”: 4X cell for enhanced resolution and scan rate, 11th European FTMS Conference, Paris, France, April 22-25, 2014.

W. Chen, P. Obermayr, U. Cernigoj, J. Vidic, M. Barut, T. Panic-Jankovic, M. Gorshkov, G Mitulovic, Immobilized monolithic enzymatic reactors for online digestion of proteins secreted by developing human embryos, 13th Human Proteome Organization World Congress HUPO, Madrid, Spain, October 5-8, 2014.

L. I. Levitsky, M. V. Ivanov, A. A. Lobas, M. L. Pridatchenko, I. A. Tarasova, K. Srzentic, Y. O. Tsybin, G. Mitulovic, M. V. Gorshkov, IdentiPy, an open-source MS/MS data search platform for shotgun proteomics, 13th Human Proteome Organization World Congress HUPO, Madrid, Spain, October 5-8, 2014.

A. A. Lobas; M. V. Ivanov; L. I. Levitsky; M. L.Pridatchenko; I. A. Tarasova; A. V. Gorshkov; A. N. Verenchikov; M. V. Gorshkov, Applicability of Partial Edman Degradation for MS/MS-free Protein Identifications in Shotgun Proteomics, 62nd ASMS Conference on Mass Spectrometry and Allied Topics, Baltimore, Maryland, June 15 - 19, 2014.

M.A. Vlasova, D. A. Karpov, M. V. Ivanov, M. A. Pyatnitskiy, V. N. Lazarev, V. G. Zgoda, A. A. Lobas, A. A. Archakov, M. V. Gorshkov, S. A. Moshkovskii, Shotgun Proteomics Recognizes Cell Lines Using Exome Data: NCI-60 Panel Case Study, 13th Human Proteome Organization World Congress HUPO, Madrid, Spain, October 5-8, 2014.

T. Panic-Jankovic, A. Lobas, M. Gorshkov, A. Fichtenabum, J. Wan, W.-Q. Chen, D. Pietrowski, S. Seyfert, R. Schmid, G. Mitulovic, Improving Prediction of IVF Success – Looking for Putative Biomarkers in IVF-Media Upon Embryo Cultivation, 13th Human Proteome Organization World Congress HUPO, Madrid, Spain, October 5-8, 2014.

W.-Q. Chen, P. Obermayr, U. Cernigoj, J. Vidic, M. Barut, T. Panic-Jankovic, M. Gorshkov, G. Mitulovic, Immobilized Monolithic Enzymatic Reactors for Online Digestion of Protein Secreted by Developing Human Embryos, 13th Human Proteome Organization World Congress HUPO, Madrid, Spain, October 5-8, 2014.

M.A. Karpova, D.S. Karpov, M.V. Ivanov, A.L. Chernobrovkin, M.A. Pyatnitsky, A.V. Lisitsa, A.I.Archakov, M.V. Gorshkov, S.A. Moshkovskii, Proteogenomic Approach to Cancer Cell Line Differentiation using Exome-Derived Variant Peptides: NCI-60 Panel Case Study; 62nd ASMS Conference on Mass Spectrometry and Allied Topics, Baltimore, Maryland, June 15 - 19, 2014.

T. Panic-Jankovic, A. Lobas, M. Gorshkov, A. Fichtenabum, J. Wan, W.-Q. Chen, D. Pietrowski, S. Seyfert, R. Schmid, G. Mitulovic, Improving Prediction of IVF Success – Looking for Putative Biomarkers in IVF-Media Upon Embryo Cultivation, 62nd ASMS Conference on Mass Spectrometry and Allied Topics, Baltimore, Maryland, June 15 - 19, 2014.

W.-Q. Chen, P. Obermayr, U. Cernigoj, J. Vidic, M. Barut, T. Panic-Jankovic, M. Gorshkov, G. Mitulovic, Immobilized Monolithic Enzymatic Reactors for Online Digestion of Protein Secreted by Developing Human Embryos, 62nd ASMS Conference on Mass Spectrometry and Allied Topics, Baltimore, Maryland, June 15 - 19, 2014.

2013

Lobas A. A., Verenchikov A. N., Goloborodko A. A., Levitsky L. I., Gorshkov M. V. (2013). Combination of Edman degradation of peptides with liquid chromatography/mass spectrometry workflow for peptide identification in bottom-up proteomics. Rapid Communications in Mass Spectrometry, (27),  391–400. doi:10.1002/rcm.6462

Goloborodko, A. A., Levitsky, L. I., Ivanov, M. V., & Gorshkov, M. V. (2013). Pyteomics — a Python Framework for Exploratory Data Analysis and Rapid Software Prototyping in Proteomics. Journal of The American Society for Mass Spectrometry, 24(2), 301–304. doi:10.1007/s13361-012-0516-6

Laskay U.A., Lobas A.A., Srzentic K., Gorshkov M.V., Tsybin Y.O. (2013) Proteome Digestion Specificity Analysis for Rational Design of Extended Bottom-up and Middle-down Proteomics Experiments, Journal of Proteome Research , 12(12), 5558–5569doi:10.1021/pr400522h

Gorshkov M.V., In search for “hidden” information in the proteomics data, FiDiPro Mini-Symposium “Strategies and Tools for Proteomic Biomarker Discovery, Center for Biotechnology, Turku University, Finland, January 26, 2013.

G. Mitulovic, T. Panic-Jankovic, D. Pietrowski, M. Gorshkov and R. Schmid. Analyzing the preimplantation secretome of human embryos. 38th FEBS Congress. Saint-Petersburg, Russia, July 6-11, 2013, FEBS Journal, 280, P.499.

M. V. Gorshkov, A. A. Lobas, L. I. Levitsky, M. V. Ivanov, M. L. Pridatchenko, I. A. Tarasova, G. Mitulovic, N. Verenchikov and A. V. Gorshkov. Towards MS/MS-free “shotgun” proteomics for increasing human proteome coverage. 38th FEBS Congress. Saint-Petersburg, Russia, July 6-11, 2013, FEBS Journal, 280, P. 613.

L.I. Levitsky, M.V. Ivanov, A.A. Lobas, M.L. Pridatchenko, I.A. Tarasova, T. Panic, G. Mitulovic, Y.O. Tsybin, U.A. Laskay, M.V. Gorshkov. An Open-Source Search Engine Utilizing a Multidimensional Scoring Algorithm for Advanced Mass Spectrometry Data Processing and Protein Identification. 61 st ASMS Conference on Mass Spectrometry and Allied Topics, Minneapolis, USA, June 9-13, 2013, Book of Abstracts P. 181.

Y.N. Nosova, T.P. Serkova, E.P. Shevtsova, A.V. Kosykh, E.A.Vorotelyak, A.A. Lobas, M.V. Gorshkov, A.A. Nazarov, E.R. Milaeva, Lonidamine tethered ruthenium compounds as promising anticancer agents, International Symposium “Modern Trends in Organometallic Chemistry and Catalysis”, Moscow, Russia, June 3-7, 2013.

U.A. Laskay, K. Srzentic, A.A. Lobas, T. Panic-Jankovic, M. Monod, M.V. Gorshkov, G. Mitulovic, Y.O. Tsybin. Middle-down Proteomics Workflow Targeting 3-7 kDa peptides for Clinical Applications. 61 st ASMS Conference on Mass Spectrometry and Allied Topics, Minneapolis, USA, June 9-13, 2013, Book of Abstracts ThP13 242.

Gorshkov M.V., Tsybin Y.O., On the utility of signal intensity measurements in Fourier transform mass spectrometry for quantitative proteomics, 24 th MassSpec-Forum-Vienna-2013, February 19-20, Vienna, Austria.

Ivanov M.V., Levitsky L.I., Lobas A.A., Pridatchenko M.L., Gorshkov M.V., Mitulovic G., Panic T., Steinhammer S., Schmid R., Diggin-up the “grey” area below the peptide identity threshold in MS/MS-based proteomics, 24 th MassSpec-Forum-Vienna-2013, February 19-20, Vienna, Austria.

2012

Tarasova I.A., Perlova T.Y., Pridatchenko M.L., Goloborodko A.A., Levitsky L.I., Evreinov V.V., Guryca V., Masselon C.D., Gorshkov A.V., Gorshkov M.V., Inversion of chromatographic elution orders of peptides and its importance for proteomics, Journal of Analytical Chemistry, 67(13), 1014-1025 (2012).

Gorshkov M.V., Fornelli L., Tsybin Y.O., Observation of ion coalescence in Orbitrap Fourier transform mass spectrometry, Rapid Communications in Mass Spectrometry, 26, 1711-1717 (2012).

 

Moskovets E., Goloborodko A.A., Gorshkov A.V., Gorshkov M.V., Limitation of predictive 2-D liquid chromatography in reducing the database search space in shotgun proteomics: In silico studies, Journal of Separation Science, 35, 1771-1778 (2012).

 

Miladinovic, S. M., Kozhinov, A. N., Gorshkov M. V., Tsybin, Y. O., On the Utility of Isotopic Fine Structure Mass Spectrometry in Protein Identification, Analytical Chemistry, 84(9), 4042-4051 (2012).  

 
Frankevich, V., Nieckarz, R. J., Sagulenko, P. N., Barylyuk, K., Zenobi, R., Levitsky, L. I., Agapov, A. Yu., Perlova, T. Y., Gorshkov M. V., Tarasova, I. A., Probing the mechanisms of ambient ionization by laser-induced fluorescence spectroscopy, Rapid Communications in Mass Spectrometry, 26(13), 1567-1572 (2012).

 

Pridatchenko M.L., Perlova T.Yu., Hamidane H.B., Goloborodko A.A., Tarasova I.A., Gorshkov A.V., Evreinov V.V., Tsybin Y.O., Gorshkov M.V., On the utility of predictive chromatography to complement mass spectrometry based intact protein identification, Analytical and Bioanalytical Chemistry, 402(8), 2521-2529 (2012).

 

L. Levitsky, A. Goloborodko, M. Ivanov, I. Tarasova and M. Gorshkov, Pyteomics - an open-source library for advanced data mining in MS-based proteomics, MassSpec Forum Vienna, 21-22 February 2012, Vienna, Austria

L. Levitsky, A. Goloborodko, M. Ivanov, I. Tarasova and M. Gorshkov, Pyteomics – an open-source Python framework for data mining in MS-based proteomics. The 6th MSBM Summer School, July 8-14 2012, Dubrovnik, Croatia

M.V. Gorshkov, E. Moskovets, A.A. Goloborodko, A.A. Lobas, A.V. Gorshkov, 2D liquid chromatography in combination with mass spectrometry: its utility and limitations for protein identifications in shotgun proteomics, MassSpec Forum Vienna, 21-22 February 2012, Vienna, Austria

A.A. Lobas, A.N. Verenchikov, A.A. Goloborodko, L.I. Levitsky, M.V. Gorshkov, On the utility of chemical degradation technique in combination with predictive chromatography in shotgun proteomics: in silico studies, RECOMB-CP 2012 - Satellite Conference on Computational Proteomics, April 6-8, 2012, San Diego, USA

A.A. Lobas, A.N. Verenchikov, A.A. Goloborodko, L.I. Levitsky and M.V. Gorshkov, On the Feasibility of Combination of Edman Degradation of Peptides with LC-MS Workflow for Peptide Identification in Bottom-up Proteomics, The 6th MSBM Summer School, July 8-14 2012, Dubrovnik, Croatia

A.A. Lobas, A.N. Verenchikov, A.A. Goloborodko, L.I. Levitsky, M.V. Gorshkov, Multidimensional approaches for peptide identification in shotgun proteomics, The 6th Central and Eastern European Proteomic Conference. October 14-17 2012, Budapest, Hungary

M. Ivanov, L. Levitsky, A. Goloborodko, I. Tarasova, S. Steinhammer, G. Mitulovic, M. Gorshkov, Performance  comparison of database search engines  using annotated MS/MS data obtained by different  dissosiation techniques, The 60th ASMS Conrefence on Mass Spectrometry and Applied Topics, May 19-24 2012, Vancouver, Canada

P. Sagulenko, A.Y. Agapov, V. Frankevich, M. V. Gorshkov, R. Zenobi, 
Ion quantification in FT-ICR mass spectrometry: employing the space-charge effect in the measured signal, 
  The 60th ASMS Conrefence on Mass Spectrometry and Applied Topics, May 19-24 2012 , Vancouver, Canada

2011

Agapov A.Yu., Levitsky L.I., Dashtiev N.Z., Gorshkov M.V., Tarasova I.A., An Atmospheric Pressure Ionization Source Based on Desorption Electrospray Ionization Technology (DESI) for Ion Cyclotron Resonance Mass Spectrometry, Journal of Analytical Chemistry, 66(14), 1376-1384 (2011).

 

Gorshkov A.V., Evreinov V.V., Pridatchenko M.L., Tarasova I.A., Filatova N.N., Rozdina I.G., and Gorshkov M.V., Applicability of the Critical Chromatography Concept to Analysis of Proteins: Dependence of Retention Times on the Sequence of Amino Acid Residues in a Chain, Polymer Science, Series A, 53(12), 1227-1241 (2011).

 

Vorobyev A., Gorshkov M.V., Tsybin Y.O., Towards data acquisition throughput increase in Fourier transform mass spectrometry of proteins using double frequency measurements, International Journal of Mass Spectrometry, 306 (2-3), 227-231 (2011).

 

Goloborodko A.A., Gorshkov M.V., Good D.M., Zubarev R.A., Sequence Scrambling in Shotgun Proteomics is Negligible, Journal of the American Society for Mass Spectrometry, 22(7), 1121-1124 (2011).

 

Sargaeva N.P., Goloborodko A.A., O’Connor P.B., Moskovets E., Gorshkov M.V., Sequence-specific predictive chromatography to assist mass spectrometric analysis of asparagine deamidation and aspartate isomerization in peptides, Electrophoresis , 32(15), 1962-1969 (2011).

L.I. Levitsky, A.A. Goloborodko, M.V. Gorshkov, Influence of search parameters and mass spectrometry data quality on search engine performance in shotgun proteomics: a systematic study, 59th ASMS Conference on Mass Spectrometry, June 5 - 9, 2011, Denver, CO.

A.A. Goloborodko, M.V. Gorshkov, D.M. Good, R.A. Zubarev, Statistical evaluation of the sequence scrambling effect on peptide identification in shotgun proteomics, 59th ASMS Conference on Mass Spectrometry, June 5 - 9, 2011, Denver, CO.

S.M. Miladinovic, A.N. Kozhinov, M.V. Gorshkov, Y.O. Tsybin, Can isotopic fine structures of peptides improve protein identification in proteomics?, 59th ASMS Conference on Mass Spectrometry, June 5 - 9, 2011, Denver, CO.

E. Moskovets, A.A. Gorloborodko, M.V. Gorshkov, Two-dimensional predictive chromatography using orthogonal stationary phases for improved MS/MS-based peptide identification, 59th ASMS Conference on Mass Spectrometry, June 5 - 9, 2011, Denver, CO.

M. V. Gorshkov, Predictive chromatography as a supplemental tool for shotgun proteomics, 9 th Austrian Proteomic Research Symposium, November 8-9, 2011, Vienna, Austria

A.A. Lobas, A.N. Verenchikov, A.A. Goloborodko, L.I. Levitsky, M.V. Gorshkov, On the utility of chemical degradation technique in combination with predictive chromatography in shotgun proteomics: in silico studies, 9 th Austrian Proteomic Research Symposium, November 8-9, 2011, Vienna, Austria

Pridatchenko M.L., Tarasova I.A., Gorshkov M.V., Universal scale of biomacromolecules retention times for shotgun proteomics problems, V Russian Mass Spectrometry Society Conference "Mass Spectrometry and Applied Topics", September 5-9 2011, Moscow, Russia, MBU-2, p.66

Agapov A.Yu., Dashtiev N.Z., Levitsky L.I., Tarasova I.A., Gorshkov M.V., DART and DESI atmospheric ion sources for bench-top ICR mass spectrometers, V Russian Mass Spectrometry Society Conference "Mass Spectrometry and Applied Topics", September 5-9 2011, Moscow, Russia, PS-7, p.146

Levitsky L.I., Agapov A.Yu., Tarasova I.A., Gorshkov M.V., Study of ion formation mechanisms in desorption electrospray ionization for low-weight compounds, 54th MIPT Conference, November 10-30 2011, Dolgoprudny, Russia, p 134-135

Levitsky L.I., Nieckarz R.J., Frankevich V.Ye., Perlova T.Yu., Sagulenko P.N., Agapov A.Yu., Tarasova I.A., Zenobi R., Gorshkov M.V., The study of desorption/ionization mechanisms in DESI ion source by laser-induced fluorescence spectroscopy, 54th MIPT Conference, November 10-30 2011, Dolgoprudny, Russia, p. 133-134

Levitsky L.I., Goloborodko A.A., Gorshkov M.V., Pyteomics - the open Python library for proteome data analysis , 34th Conference on Information Technologies and Systems, October 2-7 2011, Gelendzhik, Russia

2010

Retention time prediction using the model of liquid chromatography of biomacromolecules at critical conditions in LC-MS phosphopeptide analysis, Perlova T.Yu., Margolin Y., Pridatchenko M.L., Tarasova I.A., Goloborodko A.A., Gorshkov A.V., Moskovets E., Ivanov A.R., Gorshkov M.V.,  Proteomics, 10(19),  3458-3468 (2010).

Calibration function for the Orbitrap FTMS accounting for the space charge effect, Gorshkov, M.V., Good, D.M., Lyutvinskiy, Y., Yang, H., Zubarev, R.A.,  Journal of the American Society for Mass Spectrometry, 21(11), 1846-1851 (2010).

Critical Chromatography and Mass Spectrometry of Macromolecules: Determination  of the Position of a Functional Group in a Chain, Gorshkov A. V., Gorshkov M. V., Rozdina I. G., Tarasova I. A., Filatova N. N., Evreinov V. V. , Polymer Science A, 52(3), 340-348 (2010).

Critical chromatography of macromolecules as a tool for reading the amino acid sequence of biomacromolecules: Reality or science fiction? Gorshkov A.V., Evreinov V.V., Tarasova I.A., Gorshkov M.V. Journal of Analytical Chemistry, 65(1), 4-14 (2010).

Empirical approach to false discovery rate estimation in shotgun proteomics, Rapid Communications in Mass Spectrometry, Goloborodko A. A., Mayerhofer C., Zubarev A.R., Tarasova I.A., Gorshkov A.V., Zubarev R.A., Gorshkov M.V. 24(4), 454-462 (2010).

The alternative approach to validation of peptides identified using liquid chromatography coupled with tandem mass spectrometry, Goloborodko A. A., Mayrhofer C., Zubarev A. R., Tarasova I. A., Gorshkov A.V., Zubarev R.A., and Gorshkov M.V., Russian Mass Spectrometry, 7(1), 46-52 (2010).

HPLC combined with Electron Capture Dissociation FTICR MS detection of isoaspartic acid located at different sites within a peptide sequence, N. P. Sargaeva, A. Goloborodko, A. R. Ivanov, E. Moskovets, M. V. Gorshkov, P. B. O’Connor,  35th International Symposium on High Performance Liquid Phase Separations and Related Techniques, June 19-24, Boston, Massachussets, USA, 2010

A.V. Gorshkov, V.V. Evreinov, M.V. Gorshkov, Critical chromatography of biomacromolecules,  Russian conference “Chromatography in Industry”, April 19-23, Dzerzhinsk , Russia, 2010.

BioLCCC Model and Predictive Chromatography of Biopolymers, A.V. Gorshkov, V.V. Evreinov, M.V. Gorshkov,23nd International Symposium on Polymer Analysis and Characterization 31 May - 2 June, Pohang, Republic of Korea, 2010.

On the problem of quantification of ions in a trap of an ion cyclotron resonance mass spectrometer, M.V. Gorshkov,  9th European FTMS Conference, April 6-9, Lausanne, Switzerland, 2010.

On the utility of critical chromatography of biomacromolecules to predict protein retention in gradient HPLC, M. L. Pridatchenko, T. Yu. Perlova, I. A. Tarasova, A. A. Goloborodko, A. V. Gorshkov, V. V. Evreinov, Yu. O. Tsybin, and M. V. Gorshkov,  35th International Symposium on High Performance Liquid Phase Separations and Related Techniques, June 19-24, Boston, Massachussets, USA, 2010

Basics of the model of liquid chromatography of biomacromolecules at critical conditions: theory and experimental applications, T. Yu. Perlova, A. V. Gorshkov, V. V. Evreinov, A. A. Goloborodko, M. L. Pridatchenko, I. A. Tarasova, E. Moskovets, A. R. Ivanov, and M. V. Gorshkov, 35th International Symposium on High Performance Liquid Phase Separations and Related Techniques, June 19-24, Boston, Massachussets, USA, 2010.

Calibration of user-defined LC-MS systems for complementary filtering and validation of MS based identifications by ”predictive” chromatography of biomacromolecules, A. A. Goloborodko, T. Yu. Perlova, M. L. Pridatchenko, A. V. Gorshkov, I. A. Tarasova, E. Moskovets, M. V. Gorshkov, and A. R. Ivanov,  58th ASMS Conference on Mass Spectrometry and Allied Topics, May 23-28, Salt Lake City, Utah, 2010.

2009

A use of the models of biomacromolecules separation in AMT data base generation for shotgun proteomics, Pridatchenko M.L., Tarasova I.A., Guryca V., Kononikhin A.S., Adams C., Tolmachev D.A., Agapov A.Yu., Evreinov V.V., Popov I.A., Nikolaev E.N., Zubarev R.A., Gorshkov A.V., Masselon C.D., Gorshkov M.V.  Biochemistry (Moscow), 74(11), 1195-1202 (2009).

Permanent magnet structure with axial access for spectroscopy applications, Gorshkov M. V.,  U.S. patent 7,535,329 (2009)

Standardization of retention time data for AMT tag proteomics database generation. Tarasova I.A., Guryca V., Pridatchenko M.L., Gorshkov A.V., Kieffer-Jaquinod S., Evreinov V.V., Masselon C.D., Gorshkov M.V., Journal of Chromatography B - Analytical Technologies in Biomedical and Life Sciences, 877(4), 433-440 (2009).

Software platform ”TheorChromo” for peptide and protein liquid chromatography, A. A. Goloborodko, T. Yu. Perlova, A. V. Gorshkov, and M. V. Gorshkov, International Conference "Biochemical Physics", November 27-30, Moscow, Russia, 2009.

Liquid Chromatography of Biomacromolecules: a Way for Sequence Specific Data Mining Complementary to MS Based Protein Identifications, M.V. Gorshkov,  3rd Summer Course on Mass Spectrometry in Biotechnology and Medicine, Dubrovnik, July 5-11, 2009.

FT-ICR: basics, features and perspectives, M.V. Gorshkov,  3rd Summer Course on Mass Spectrometry in Biotechnology and Medicine, Dubrovnik, July 5-11, 2009

Novel approach to phosphopeptide profiling based on combination of liquid chromatography at critical conditions and mass spectrometry, T.Yu. Perlova, Y. Margolin, I.A. Tarasova, A.A. Goloborodko, A.V. Gorshkov, E. Moskovets, A.R. Ivanov, M.V. Gorshkov,  57th ASMS Conference on Mass Spectrometry and Allied Topic, May 31 -June 4, Philadelphia, Pennsylvania, 2009.

Orthogonal criteria for validation of MS/MS based peptide identifications in shotgun proteomics, A.A. Goloborodko, C. Mayerhofer, A.R. Zubarev, I.A. Tarasova, A.V. Gorshkov, R.A. Zubarev, M.V. Gorshkov, 57th ASMS Conference on Mass Spectrometry and Allied Topic, May 31 -June 4, Philadelphia, Pennsylvania, 2009.

Study on the space-charge mediated shift in magnetron frequency and its utility for quantitative measurements in FT-ICR mass spectrometry, P.N. Sagulenko, A.Yu. Agapov, D.A. Tolmachev, M.V. Gorshkov, 57th ASMS Conference on Mass Spectrometry and Allied Topic, May 31 -June 4, Philadelphia, Pennsylvania, 2009.

Model of critical chromatography of biomacromolecules for phosphoproteomics, T.Yu. Perlova, I.A. Tarasova, M.L. Pridatchenko, A.R. Ivanov, M.V. Gorshkov,  Proceedings of IV Russian Conference “Proteins and Peptides”, June 23-27, Kazan, Russia, 2009, p.297.

Internet-accessible software tools “Theoretical chromatograph: BioLCCC-2LS” for proteomic data analysis, A.A. Goloborodko, S.S. Shitov, I.A. Tarasova, A.V. Gorshkov, M.V. Gorshkov,  Proceedings of IV Russian Conference “Proteins and Peptides”, June 23-27, Kazan, Russia, 2009, p.289.

Critical chromatography of proteins and peptides in proteomics: can we “read” sequence?, I.A. Tarasova, A.V. Gorshkov, V.V. Evreinov, M.L. Pridatchenko, A.A. Goloborodko, T.Yu. Perlova, M.V. Gorshkov,  Proceedings of IV Russian Conference “Proteins and Peptides”, June 23-27, Kazan, Russia, 2009, p.139.

Applicability of the model of critical chromatography BioLCCC to analysis of the whole proteins, M.L. Pridatchenko, I.A. Tarasova, M.V. Gorshkov, N.N. Filatova, I.G. Rozfina, A.V. Gorshkov, V.V. Evreinov,  Proceedings of IV Russian Conference “Proteins and Peptides”, June 23-27, Kazan, Russia, 2009, p.131.

Reversal in the order of peptide elution with a change in separation conditions in gradient reversed-phase HPLC: possible reasons from the point of the theory of critical chromatography of biomacromolecules, I.A. Tarasova, A.V. Gorshkov, V.V. Evreinov, C.D. Masselon, V. Guryca, M.L. Pridatchenko, M.V. Gorshkov,  Proceedings of the 3nd Conference of Russian Mass Spectrometry Society on Mass Spectrometry and Allied Topics, Moscow, Russia, May 18-22, 2009, p.80.

Orthogonal criteria for validation of mass-spectrometry based peptide identifications, A.A. Goloborodko, R.A. Zubarev, M.V. Gorshkov,  Proceedings of the 3nd Conference of Russian Mass Spectrometry Society on Mass Spectrometry and Allied Topics, Moscow, Russia, May 18-22, 2009, p.70.

Prediction of phosphopeptide elution times using the model of liquid critical chromatography of biomacromolecules, T.Yu. Perlova, I.A. Tarasova, M.V. Gorshkov,  Proceedings of the 3nd Conference of Russian Mass Spectrometry Society on Mass Spectrometry and Allied Topics, Moscow, Russia, May 18-22, 2009, p.69.

2008

Protein identification using LC-MS data and retention time prediction, I.A. Tarasova, R.A. Zubarev, A. A. Goloborodko, A.V. Gorshkov, M.V. Gorshkov, Russian Mass Spectrometry, 2008, 5(1), 7-24

Permanent magnet FTICR Mass Spectrometer with atmospheric pressure ionization sources, D. A. Tolmachev, I. A. Tarasova, K.P. Novoselov, P. N. Sagulenko, S. S. Chitov, M. L. Pridatchenko, V. M. Doroshenko, M.V. Gorshkov,Russian Mass Spectrometry, 5(2), 83-102 (2008)

Applicability of Critical Chromatography Concept to Proteomics Problems: Experimental Study of Dependence of Retention Time on the Sequence of Amino Acids, Tarasova I.A., Gorshkov A.V., Evreinov V.V., Adams C., Zubarev R.A., Gorshkov M.V., Polymer Science A, 2008, 50(3), 309-321.

Performance Enhancement for a Hybrid 1 T ppermanent magnet ESI-FTICR Mass Spectrometer using Multiple Frequency Detection; P.S. Sagulenko, D.A. Tolmachev, A.N. Vilkov, V.M. Doroshenko, M.V. Gorshkov; 56th ASMS Conference on Mass Spectrometry and Allied Topic, June 1-5, 2008; Denver, Colorado.

Standard Retention Time Scale for Collaborative Generation of Accurate Mass and Time Tag(AMT) Databases; M.L. Pridatchenko, I.A. Tarasova, A.S. Kononikhin, V. Guricya, D.A. Tolmachev, A.Yu. Agapov, C. Adams, I.A. Popov, A.V. Gorshkov, C.D. Masselon, R.A. Zubarev, E.N. Nikolaev, M.V. Gorshkov; 56th ASMS Conference on Mass Spectrometry and Allied Topic, June 1-5, 2008; Denver, Colorado.

A Use of HPLC Data for Filtering and Validation of MS Based Peptid Identifications; I.A. Tarasova, A.A. Goloborodko, R.A. Zubarev, M.V. Gorshkov; 56th ASMS Conference on Mass Spectrometry and Allied Topic, June 1-5, 2008; Denver, Colorado.

Orthogonal criteria to validate an accuracy of mass-spectrometry based peptide identifications, A.A. Goloborodko, M.V. Gorshkov, I.A. Tarasova, R.A. Zubarev, M.V. Gorshkov, VIII International Youth Conference "Biochemical Physics", Moscow, November 11-13, 2008.

Applicability of critical liquid chromatography of biomacromolecules in proteomics: analysis of posttranslational modifications, T.Yu. Perlova, I.A. Tarasova, A.V. Gorshkov, A.A. Goloborodko, V.V. Evreinov, M.V. Gorshkov, VIII International Youth Conference "Biochemical Physics", Moscow, November 11-13, 2008.

Toward error free de novo protein sequencing by combined liquid chromatography at critical conditions and tandem mass spectrometry, J. Allegrand, H. Ben Hamidane, S. Chitov, M.V. Gorshkov, Y. O. Tsybin, Fall Meeting of Swiss Chemical Society, Zurich, September 11, 2008, Switzerland

On the accuracy of peptide identifications from mass spectrometry data, A.A. Goloborodko, A.V. Gorshkov, M.V. Gorshkov, R.A. Zubarev, Proceedings of LI MIPT Conference on Modern Problems in Basic and Applied Sciences, pp.77-79 (2008).

Accounting of non-local interactions in the model of critical liquid chromatography of biomacromolecules, S.S. Chitov, A.V. Gorshkov, M.V. Gorshkov, I.A. Tarasova, M.L. Pridatchenko, Proceedings of LI MIPT Conference on Modern Problems in Basic and Applied Sciences, pp.110-113 (2008).

On the feasibility of using the critical liquid chromatography of biomacromolecules in phosphoproteomics, T.Yu. Perlova, I.A. Tarasova, A.V. Gorshkov, A.A. Goloborodko, M.V. Gorshkov, Proceedings of LI MIPT Conference on Modern Problems in Basic and Applied Sciences, pp.240-242 (2008).

2007

1 Tesla Permanent Magnet ESA FTICR Mass Spectrometer: Instrument Design and Inital Results, Andery N. Vilkov, Chaminda M. Gamage, Alexander S. Misharin, Vladimir M. Doroshenko, Dmitry A. Tolmachev, Irina A. Tarasova, Mikhail V. Gorshkov, 6th North American FTICR MS Conference, April 1 - 5, 2007, Lake Tahoe, California.

Data Station for Bench Top Hybrid FTICRMS, Harybin O.N., Novoselov K.P., Tolma4ev D.A., Agapov A.Yu., Spassky A.I., Gorshkov M.V., Proceedings of the 3rd International Workshop on Mass Spectrometry in Chemical Physics, Bio-Physics, and Environmental Sciences ", April 16 - 21, 2007, Zvenigorod, Russia.

Theoretical Chromatograph: Practical Realization of Liquid Chromatography at Critical Conditions, Tarasova I.A., Gorshkov A.V., Evreinov V.V., Goloborodko A.A., Chitov S.S., Pridatchenko M.L., Gorshkov M.V., Proceedings of the 3rd International Workshop on Mass Spectrometry in Chemical Physics, Bio-Physics, and Environmental Sciences ", April 16 - 21, 2007, Zvenigorod, Russia.

Standartization of Chromatographic Data for Macromolecules in Gradient HPLC, Pridatchenko M.L., Tarasova I.A., Masselon C.D., Gorshkov A.V., Gorshkov M.V., Proceedings of the 3rd International Workshop on Mass Spectrometry in Chemical Physics, Bio-Physics, and Environmental Sciences ", April 16 - 21, 2007, Zvenigorod, Russia.

Dynamics of Motion in a Trap of a Permanent Magnet Fourier Tranform Ion Cyclotron Resonance Mass Spectrometer, Agapov A.Yu, Sagulenko P.N., Tolmachev D.A., Gorshkov M.V., Proceedings of the 3rd International Workshop on Mass Spectrometry in Chemical Physics, Bio-Physics, and Environmental Sciences ", April 16 - 21, 2007, Zvenigorod, Russia.

Primary Structure Identification Using Liquid Chromatograph at Critical Conditions, Tarasova I.A., Gorshkoc A.V., Evreinov V.V., Gorshkov M.V., Proceedings of the 3rd International Workshop on Mass Spectrometry in Chemical Physics, Bio-Physics, and Environmental Sciences ", April 16 - 21, 2007, Zvenigorod, Russia.

A Permanent Magnet Hybrid Bench-Top Fourier Transform Ion Cyclotron Resonance Mass Spectrometer with Linear RF Ion Trap and Electrospray Ionization Source, Tolmachev D.A., Vilkov A.N., Doroshenko V.M., Tarasova I.A., Driven V.V., Agapov A.Yu., Gorshkov M.V., Proceedings of the 3rd International Workshop on Mass Spectrometry in Chemical Physics, Bio-Physics, and Environmental Sciences ", April 16 - 21, 2007, Zvenigorod, Russia.

A universal approach to generation of databases of peptide accurate mass and time tags using critical chromatography of biomacromolecules, Marina L. Pridatchenko, Irina A. Tarasova, Cristophe D. Masselon, Alexander V. Gorshkov, Michael V. Gorshkov, Proceedings of L MIPT Conference on Modern Problems in Basic and Applied Sciences , November 23 2007, Dolgoprudniy, Russia.

Positive and negative analyte ion yield in matrix-assisted laser desorption/ionization, International Journal of Mass Spectrometry, Dashtiev M., Waefler E., Roehling U., M Gorshkov M., Hillenkamp F., Zenobi R., 268, 122-130 (2007).

Retention Time Conversion for Cross-Platform Tranfer of HPLC-MS/MS Proteomics Data, Irina A. Tarasova, Christophe D. Masselon, Marina L. Pridatchenko, Sylvie Kieffer-Jaquinod, Vilem Gyryca, Jerom Garin, Alexander V. Gorshkov, Victor V. Evreinov, Michael V. Gorshkov, 55th ASMS Conference on Mass Spectrometry and Allied Topics, June 3 - June 7 2007, Indianapolis, Indiana.

MassSpecter: A Modular Data Station for a Hybrid ESI-FTICR Mass Spectrometry, Dmitry A. Tolmachev, Konstantin P. Novoselov, Oleg N. Kharybin, Andrey N. Vilkov, Vladimir M. Doroshenko, Michael V. Gorshkov, 55th ASMS Conference on Mass Spectrometry and Allied Topics, June 3 - June 7 2007, Indianapolis, Indiana.

ECD and CID of Peptid Ions in a Hybrid Permanent Magnet FT-ICR Mass-Spectrometer, Chaminda M. Gamage, Alexander S. Misharin, Andrey N. Vilkov, Michael V. Gorshkov, Vladimir M. Doroshenko, 55th ASMS Conference on Mass Spectrometry and Allied Topics, June 3 - June 7 2007, Indianapolis, Indiana.

Characterization of Electrospray Ionization Hybrid Permanent Magnet FTICR Mass Spectrometer, Michael V. Gorshkov, Andrey N. Vilkov, Dmitry A. Tolmachev, Chaminda M. Gamage, Alexander S. Misharin, Irina A. Tarasova, Vladimir M. Doroshenko, 55th ASMS Conference on Mass Spectrometry and Allied Topics, June 3 - June 7 2007, Indianapolis, Indiana.

Positive and Negative Ion Fields in Matrix-Assisted Laser Desorption Ionization Mass Spectrometry, Maxim Dashtiev, Esther Wafler, Michael Gorshkov, Franz Hillenkamp, Ulrich Roehling, Renato Zenobi, 55th ASMS Conference on Mass Spectrometry and Allied Topics, June 3 - June 7 2007, Indianapolis, Indiana.

Atmospheric Pressure Ionization Permanent Magnet Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Vilkov A.N., Gamage C.M., Misharin A.S., Doroshenko V.M., Tolmachev D.A., Tarasova I.A., Kharybin O.N., Novoselov K.P. and Gorshkov M.V., Journal of the American Society for Mass Spectrometry, 18 (8), 1552-1558 (2007).

Applicability of the critical chromatography concept to proteomics problems: Dependence of retention time on the sequence of amino acids, Gorshkov, A. V., Evreinov, V. V., Tarasova, I. A., and Gorshkov, M. V., Polymer Science B,  49 (3-4): 93-107 (2007).

On the features of fourier transform ion cyclotron resonance mass spectrometry at low magnetic fields, Mikhail V. Gorshkov, Dmitry A.Tomachev, Konstantin P. Novoselov, Irina A. Tarasova, Vladimir V. Driven, Alexander Yu. Agapov, Andrey N. Vilkov, Alexander S. Misharin, Chaminda M. Gamage, Vladimir M.  Doroshenko,  8th European FTMS conference Moscow, Russia August 27 – September 1, 2007.

Liquid Chromatography at Critical Conditions in Combination with Mass Spectrometry: a Comprehensive Approach to Read Sequences, Mikhail V. Gorshkov, 2nd Summer Course on Mass Spectrometry in Biotechnology and Medicine, Dubrovnik, Croatia, July 7-14, 2007.

Fourier transform mass spectrometry of biopolymers at low magnetic fields, Mikhail V. Gorshkov, 2nd Summer Course on Mass Spectrometry in Biotechnology and Medicine, Dubrovnik, Croatia, July 7-14, 2007.

Atmospheric Pressure Ionization Permanent Magnet Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Andrey N. Vilkov, Chaminda M. Gamage, Alexander S. Misharin, Vladimir M. Doroshenko, Dmitry A. Tolmachev, Irina A. Tarasova, Oleg N. Kharybin, Konstantin P. Novoselov and Michael V. Gorshkov, Journal of the American Society for Mass Spectrometry, 18 (8), 2007, 1552-1558

2006

Liquid Chromatography at Critical Conditions: Comprehensive Approach to Sequence-Dependent Retention Time Prediction, A. V. Gorshkov, I. A. Tarasova, V. V. Evreinov, M. M. Savitski, M. L. Nielsen, R. A. Zubarev, and M. V .Gorshkov, Analytical Chemistry, 78, 7770-7777 (2006).

Towards High Throughput Proteomics: Liquid Chromatography at Critical Conditions/Mass Spectrometry, I. A. Tarasova; A. V. Gorshkov; V. V. Evreinov, A. A. Goloborodko, S. S. Chitov, M. L. Nielsen,  R. A. Zubarev,  and M. V. Gorshkov, 17th International Mass Spectrometry Conference, Prague, Czech Republic, August 28th-September 1st, 2006.

Permanent Magnet for FTICR Mass Spectrometer With External Ion Sources. Tarasova I.A., Tolmachev D.A., Vilkov A.N., Doroshenko V.M., and Gorshkov M.V., Russian Mass Spectrometry, 3 (2), 1-12 (2006).

BioLCCC-MS/MS Tools: a Comprehensive Approach to Sequence Dependent Retention Time Prediction, Irina A. Tarasova; Alexander V. Gorshkov; Victor V. Evreinov; Roman A. Zubarev; Mikhail V. Gorshkov, 54th Conference of American Society for Mass Spectrometry and Allied Topics, May 28 - June 1, Seattle, WA, 2006.

Atmospheric Pressure Ionization Permanent Magnet FTICR Mass Spectrometer: A Way to High Performance Mass Spectrometry in a Bench-Top Size, Andrey N. Vilkov, Vladimir M. Doroshenko, Irina A. Tarasova, Dmitry A. Tolmachev, Mikhail V. Gorshkov, 54th Conference of American Society for Mass Spectrometry and Allied Topics, May 28 - June 1, Seattle, WA, 2006.

2005

C?-C Backbone Fragmentation Dominates in Electron Detachment Dissociation of Gas-Phase Polypeptide Polyanions, Frank Kjeldsen, Oleg A. Silivra, Igor A. Ivonin, Kin F. Haselmann, Mikhail Gorshkov and Roman A. Zubarev, Chemistry European Journal, 11, 1803-1812 (2005).

On the Accuracy of Polypeptide Masses Measured in a Linear Ion Trap, M. V. Gorshkov, R. A. Zubarev, Rapid Communications in Mass Spectrometry, 19, 3755-3758 (2005).

A Concept of Liquid Chromatography at Critical Conditions in Combination With Mass Spectrometry: From Polymers to Biopolymers, I. A. Tarasova, A. V. Gorshkov, V. V. Evreinov, O. N. Kharybin, M. V. Gorshkov, 53rd Conference of American Society for Mass Spectrometry and Allied Topics, San Antonio, Texas, June 5 – 9, 2005, ThP263.

Linear Ion Trap Mass Spectrometer LTQ: Testing the Limits in Mass Accuracy and Resolution, M. V. Gorshkov, R. A. Zubarev, 53rd Conference of American Society for Mass Spectrometry and Allied Topics, San Antonio, Texas, June 5 – 9, 2005, ThP207.

Fluorescence Resonance Energy Transfer in Gas Phase Ions, M. Dashtiev, V. Azov, V. Frankevich, L. Scharfenberg, R. Zenobi, 53rd Conference of American Society for Mass Spectrometry and Allied Topics, San Antonio, Texas, June 5 – 9, 2005, WP142.

Magnetic System for AP-MALDI-miniFTICR Mass Spectrometer, I. A. Tarasova, M. V. Gorshkov, V. M. Doroshenko, I. A. Popov, O. N. Kharybin, V.V. Driven, 2nd Conference of Russian Mass Spectrometry Society on Mass Spectrometry and Allied Topics, Moscow, Russia, September 12-16, 2005.

Combination of Mass Spectrometry and Liquid Chromatography at Critical Conditions: A New Approach to Study Biomolecules, M.V. Gorshkov, A.V.Gorshkov, V.V. Evreinov, I.A. Tarasova, 2nd Conference of Russian Mass Spectrometry Society on Mass Spectrometry and Allied Topics, Moscow, Russia,September 12-16, 2005.

2004

Consideration on Electron Capture Dissociation Efficiency in FTICR Mass Spectrometry, Michael V. Gorshkov, Christophe D. Masselon, Eugene N. Nikolaev, Harold R. Udseth, Ljiljana Pasa-Tolic, and Richard D. Smith, International Journal of Mass Spectrometry, 234 (1-3), 131-136 (2004).

Influence of spectral line shape on mass accuracy in FTICR: optimization of the calibration law, I.A. Tarasova, M.V. Gorshkov, Russian Chemical Physics, 23, No.7, 62-67 (2004).

I. A. Tarasova, M. V. Gorshkov, FTICR mass spectrometry at low magnetic field, I. A. Tarasova, M. V. Gorshkov, Proceedings of the 2nd International Workshop on Mass Spectrometry in Chemical Physics, Bio-Physics, and Environmental Sciences, Zvenigorod, Russia, October 4-7, 2004, p. 118.

G.B. Pronchev , I.A. Tarasova, D.N. Brumirsky, M.V. Gorshkov; Virtual Analytical Laboratory for Science and Education Activities, 2-nd International Workshop-School on Mass Spectrometry in Chemical Physics, Biophysics and Environmental Science, Moscow, Russia, October 4-7, 2004, p.100.

M. V. Gorshkov, I. A. Tarasova, J. M. Price, Broadband detection of ions at resonant frequencies for radio-frequency quadrupole ion trap mass-spectrometers (QIT-MS), Proceedings of the 2nd International Workshop on Mass Spectrometry in Chemical Physics, Bio-Physics, and Environmental Sciences, Zvenigorod, Russia, October 4-7, 2004, p. 60.

I.A. Popov, O.N. Kharibin, M.V. Gorshkov, A.S. Kononihin, A.I. Spasskiy, D.N. Brumirsky, I.A. Tarasova, V.V. Driven, E.N. Nikolaev; Fourier Transform Ion Cyclotron Resonance Mass Spectrometry for Biopolymer Analysis, 2-nd International Workshop-School on Mass Spectrometry in Chemical Physics, Biophysics and Environmental Science, Moscow, Russia, October 4-7, 2004, p.120.

M.V. Gorshkov, O.N. Kharibin, I.A. Tarasova, D.N. Brumirsky, I.A. Popov, A.S. Kononihin, A.I. Spasskiy, E.N. Nikolaev, A.V. Gorshkov, V.V. Evreinov; Synthetic-Base Polymer Analysis Using Liquid Chromatography Tandem FTICR Mass Spectrometry, 2-nd International Workshop-School on Mass Spectrometry in Chemical Physics, Biophysics and Environmental Science, Moscow, Russia, October 4-7, 2004, p.229.

I.A. Popov, O.N. Kharibin, D.N. Brumirsky, A.S. Kononihin, A.I. Spasskiy, M.V. Gorshkov, E.N. Nikolaev; Investigation of Chirality in Shot Peptides by Collision-Activated Dissociation Method, 2-nd International Workshop-School on Mass Spectrometry in Chemical Physics, Biophysics and Environmental Science, Moscow, Russia, October 4-7, 2004, p.244.

I. A. Tarasova, M. V. Gorshkov; Characterization of FTICR mass spectrometry at low magnetic field, 7th European Workshop on Fourier Transform Mass Spectrometry, Konstanz, Germany, March 28-31, 2004, p.15.

A. I. Spasskij; O. N. Harybin; I. A. Popov; A. S. Kononikhin; D. N. Brumirsky; K. S. Chingin; V. V. Driven; M.V. Gorshkov; E. N. Nikolaev, Intermediate pressure MALDI inside ion funnel for FT ICR, 52nd Conference of American Society for Mass Spectrometry and Allied Topics, Nashville, Tennessee, May 23 – 27, 2004, WPG120.

Gorshkov M. V., Popov I. A., Kharybin O. N., Brumirsky D. N., Tarasova I. A., Driven V. V., Kononikhin A. N., Spassky A. I., Nikolaev E. N., Towards implementation of electron capture dissociation technique for mass spectrometers with radio-frequency multipole transmission ion guides, 52nd Conference of American Society for Mass Spectrometry and Allied Topics, Nashville, Tennessee, May 23 – 27, 2004, TPG128.

Gorshkov A.V., Evreinov V. V., Gorshkov M. V., On the Feasibility of liquid chromatography at critical conditions in combination with mass spectrometry for structural characterization of biopolymers, 52nd Conference of American Society for Mass Spectrometry and Allied Topics, Nashville, Tennessee, May 23 – 27, 2004, MPX447.

A.I. Spassky, O.I. Kharibin, I.A. Popov, M.V. Gorshkov, A.S. Kononikhin, D.N. Brumirskiy, E.N. Nikolaev, Combination of a high pressure MALDI ion source and radiofrequency ion Funnel, Proceedings of 10th International Conference Desorption 2004, Saint-Petersburg, August 29 – September 2, 2004, p.43.

2003

Frank Kjeldsen, Igor Ivonin, Oleg Silivra, Mikhail Gorshkov, Roman Zubarev, Ion-electron Reactions in a Quadrupole Ion Trap, 1st International Uppsala Symposium on Electron Capture Dissociation of Biomolecules and Related Phenomena, Stockholm, Sweden, October 19-22, 2003.

I.A. Popov, O.N. Kharybin, A.C. Kononikhin, D.N. Brumirski, A.I. Spasski, M.V. Gorshkov, E.N. Nikolaev, Methods to increase sensitivity in ESI FTICR mass spectrometry, Proceedings of XLVI MIPT Conference on Modern Problems in Basic and Applied Sciences, Moscow, November 28-29, 2003, p.61.

I.A.Tarasova, M.V.Gorshkov, Effect of ion trap parameters on sensitivity in FTICR mass spectrometry, Proceedings of XLVI MIPT Conference on Modern Problems in Basic and Applied Sciences, Moscow, November 28-29, 2003, p.59-60.

D.N. Brumirski, M.V. Gorshkov, O.N. Kharybin, I.A. Popov, I.A. Tarasova, E.N. Nikolaev, On efficiency of Electron Capture Dissociation method, Proceedings of XLVI MIPT Conference on Modern Problems in Basic and Applied Sciences, Moscow, November 28-29, 2003, p.58.

Gorshkov M.V., Masselon C.D., Nikolaev E.N., Smith R.D., Considerations on Efficiency of Electron Capture Dissociation in FTICR Mass Spectrometry, 1st International Uppsala Symposium on Electron Capture Dissociation of Biomolecules and Related Phenomena, Stockholm, Sweden, October 19-22, 2003.

Tarasova I.A., Driven V.V., Dashtiev M.I., Brumirsky D.N., Pronchev G.B., Gorshkov M.V., On-line ESI radiofrequency ion trap mass spectrometer for collaborative research and education activities via Internet, 16th International Mass Spectrometry Conference, Edinburg, UK, August 31st-September 5th, 2003, ThC-159.

Gorshkov M.V., Masselon C.D., Nikolaev E.N., Udseth H.R., Pasa-Tolic L., Smith R.D., SORI-ECD: Looking at the Ways to Improve Electron Capture Dissociation Efficiency, 51st Conference of American Society for Mass Spectrometry and Allied Topics, Montreal, Canada, June 8-12, 2003, TPH156.

2002

Characteristics of photoelectrons emitted in MALDI-FTICR experiments, Gorshkov M.V., Frankevich V.E., Zenobi R., European Journal of Mass Spectrometry, 8, 67-69 (2002).

High performance ESI FTICR mass spectrometry at low magnetic field, Gorshkov M.V., Udseth H.R., Anderson G.A., Smith R.D., European Journal of Mass Spectrometry, 8, 169-176 (2002).

Electrospray FTICR mass spectrometer for biochemical research, Gorshkov M.V., Kharybin O.N., Vilkov A.N., Driven V.V., Popov I.N., Dashtiev M.I., Nikolaev E.N., Khimicheskaya Phyzika (Russian Chemical Physics), 21 (4), 32-38 (2002).

Interference of peaks in Fourier transform ICR spectra: optimization of calibration law, I.A. Tarasova, M. V. Gorshkov, XLV Scientific Conference of Moscow Institute of Physics and Technology, Dolgoprudny, November 29-30, 2002.

Fluorescent detection and spectroscopy of mass-selected trapped biomolecular ions, V. E. Frankevich, M. V. Gorshkov, J. Zhang, and R. Zenobi, 50th Conference of American Society for Mass Spectrometry and Allied Topics, Orlando, Florida, June 2-6, 2002, MPJ282.

The role of electrons in MALDI FTICR experiments, V. E. Frankevich, M. V. Gorshkov, R. Knochemuss, J. Zhang, and R. Zenobi, 50th Conference of American Society for Mass Spectrometry and Allied Topics, Orlando, Florida, June 2-6, 2002, MPJ284.

Reduction of Divalent Metal Ions Used for Cationization in MALDI MS, J. Zhang, V. E. Frankevich, R. Knochemuss, M. V. Gorshkov, and R. Zenobi, 50th Conference of American Society for Mass Spectrometry and Allied Topics, Orlando, Florida, June 2-6, 2002, MPJ285.

Ion cyclotron resonance mass spectrometer for biological applications, M. V. Gorshkov, O. N. Kharybin, A. N. Vilkov, V. V. Driven, M. I. Dashtiev, I. A. Popov, E. N. Nikolaev, Workshop on Mass Spectrometry in Chemical Physics, Bio-Physics, and Environmental Sciences, Zvenigorod, Russia, April 25-26, 2002, p.73.

An Internet-Accesible Mass Spectrometer, A. N. Vilkov, I. A. Tarasova, O. N. Kharybin, V. V. Driven, M. I. Dashtiev, I. A. Popov, and M. V. Gorshkov, Workshop on Mass Spectrometry in Chemical Physics, Bio-Physics, and Environmental Sciences, Zvenigorod, Russia, April 25-26, 2002, p.207.

Innovations in MALDI FTICR mass spectrometry, V. E. Frankevich, M. V. Gorshkov, J. Zhang, and R. Zenobi, Workshop on Mass Spectrometry in Chemical Physics, Bio-Physics, and Environmental Sciences, Zvenigorod, Russia, April 25-26, 2002, p.40.

2001

A dynamic ion cooling technique for FTICR mass spectrometry, Gorshkov M.V., Masselon C.D., Anderson G.A., Udseth H.R., Harkewicz R., Smith R.D., Journal of the American Society for Mass Spectrometry, 12 (11), 1169-1173 (2001).

Controlled ion fragmentation in a 2-D quadrupole ion trap for external ion accumulation in ESI FTICR mass spectrometry, Belov M.E., Gorshkov M.V., Udseth H.R., Smith R.D., Journal of the American Society for Mass Spectrometry, 12 (12), 1312-1319 (2001).

Dynamically assisted gated trapping for Fourier transform ion cyclotron mass spectrometry, Gorshkov M.V., Masselon C.D., AndersonG.A., Udseth H.R., Smith R.D., Rapid Communications in Mass Spectrometry, 15 (17), 1558-1561 (2001).

Improved low-energy electron injection systems for high rate electron capture dissociation in Fourier transform ion cyclotron resonance mass spectrometry, Youri O. Tsybin Yu.O., Hеkansson P., Budnik B.A., Haselmann K.F., Kjeldsen F., Gorshkov M., Zubarev R.A., Rapid Communications in Mass Spectrometry, 15 (19), 1849-1854 (2001).

Optimal pressure conditions for unbiased external ion accumulation in a two-dimensional radio-frequency quadrupole for Fourier transform ion cyclotron resonance mass spectrometry, Belov M.E., Gorshkov M.V., Alving K., Smith R.D., Rapid Communications in Mass Spectrometry, 15 (21), 1988-1996 (2001).

Instrumentation for in situ and Non-Destructive Analysis of Cryosynthesis Products, Frankevich V.E., Kharybin O.N., Turina L.A., Barkovsky G.B., Gorshkov M.V., Vilkov A.N., Nikolaev E.N., Advances in Mass Spectrometry, 15, 445-447 (2001).

Electrospray Ion Trap/FTICR Mass Spectrometer for Biological Applications, Gorshkov M.V., Vilkov A.N., Ukhanov G.P., Kharybin O.N., Frankevich V.E., Nikolaev E.N., Advances in Mass Spectrometry, 15, 449-452 (2001).

Design and performance of an ESI interface for selective external ion accumulation coupled to a Fourier transform ion cyclotron mass spectrometer, Belov M.E., Nikolaev E.N., Anderson G.A., Udseth H.R., Conrads T.P., Veenstra T.D., Masselon C.D., Gorshkov M.V., Smith R.D., Analytical Chemistry, 73 (2): 253-261 (2001).

FTICR signal enhancement via dynamically controlled trapping potentials, M. V. Gorshkov, C. D. Masselon, H. R. Udseth, and R. D. Smith, 6th European Workshop on Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Kerkade, The Netherlands, October 16-19, 2001, p.74.

Dynamic ion cooling technique for FTICR mass spectrometry with external ion accumulation, M. V. Gorshkov, C. D. Masselon, G. A. Anderson, H. R. Udseth, R. Harkewicz, and R. D. Smith, 49th Conference of American Society for Mass Spectrometry and Allied Topics, Chicago, Illinois, May 27-31, 2001, WPM258.

Ion dynamics in high and medium pressure rf multipoles operated in continuous and pulsed beam modes: quadrupole and octopole cases, V. S. Rakov, A. V. Tolmachev, M. E. Belov, M. V. Gorshkov, L. Pasa-Tolic, H. R. Udseth, and R. D. Smith, 49th Conference of American Society for Mass Spectrometry and Allied Topics, Chicago, Illinois, May 27-31, 2001, WPM254.

External ion accumulation in rf-only multipoles at different pressure for FTICR mass spectrometry, M. V. Belov, M. V. Gorshkov, V. S. Rakov, K. Alving, H. R. Udseth, and R. D. Smith, 49th Conference of American Society for Mass Spectrometry and Allied Topics, Chicago, Illinois, May 27-31, 2001, WPM252.

On improving the performance of a FTICR mass spectrometer with an external accumulation device, M. V. Belov, M. V. Gorshkov, H. R. Udseth, and R. D. Smith, 3rd North American FTICR MS Conference, Austin, TX, March 20 - 21, 2001.

2000

Study of ion loss mechanism in a trap of an FTICR mass spectrometer, Vilkov A.N., Gorshkov M.V., Nikolaev E.N., Khimicheskaya Phyzika (Russian Chemical Physics), 19, 47-51 (2000).

Zeptomole-sensitivity electrospray ionization - Fourier transform ion cyclotron resonance mass spectrometry of proteins, Belov M.E., Gorshkov M.V., Udseth H.R., Anderson G.A., Smith R.D., Analytical Chemistry, 72 (10): 2271-2279 (2000).

A novel high-performance Fourier transform ion cyclotron resonance cell for improved biopolymer characterization, Bruce J.E., Anderson G.A., Lin C.Y., Gorshkov M., Rockwood A.L., Smith R.D., Journal of Mass Spectrometry, 35 (1): 85-94 (2000).

Initial implementation of an electrodynamic ion funnel with Fourier transform ion cyclotron resonance mass spectrometry, Belov M.E., Gorshkov M.V., Udseth H.R., Anderson G.A., Tolmachev A.V., Prior D.C., Harkewicz R., Smith R.D., Journal of the American Society for Mass Spectrometry, 11 (1): 19-23 (2000).

Selective external accumulation of electrospray-generated ions coupled to Fourier transform ion cyclotron resonance mass spectrometry, M. E. Belov, Y. N. Nikolaev, G. A. Anderson, H. R. Udseth, M. V. Gorshkov, T. Bailey, R. D. Smith, 48th Conference of American Society for Mass Spectrometry and Allied Topics, Long Beach, California, June 11-15, 2000, WPA025.

Electrospray ion trap/FTICR mass spectrometer for biological applications, M. V. Gorshkov, A. N. Vilkov, G. P. Ukhanov, O. N. Kharybin, V. E. Frankevich, E. N. Nikolaev, 15th International Mass Spectrometry Conference, Barcelona, Spain, August 27-31, 2000, A152.

Instrumentation for in situ non-destructive analysis of cryosyntheses products, V. E. Frankevich, O. N. Kharybin, L. A. Turina, G. B. Barkovskiy, M. V. Gorshkov, A. N. Vilkov, E. N. Nikolaev, 15th International Mass Spectrometry Conference, Barcelona, Spain, August 27-31, 2000, A153.

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